//************************************************************************//
//									  //
//  Copyright 2013 Bertram Kopf (bertram@ep1.rub.de)			  //
//  	      	   Julian Pychy (julian@ep1.rub.de)			  //
//          	   - Ruhr-Universit??t Bochum 				  //
//									  //
//  This file is part of Pawian.					  //
//									  //
//  Pawian is free software: you can redistribute it and/or modify	  //
//  it under the terms of the GNU General Public License as published by  //
//  the Free Software Foundation, either version 3 of the License, or 	  //
//  (at your option) any later version.	 	      	  	   	  //
//									  //
//  Pawian is distributed in the hope that it will be useful,		  //
//  but WITHOUT ANY WARRANTY; without even the implied warranty of	  //
//  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the	  //
//  GNU General Public License for more details.	      		  //
//									  //
//  You should have received a copy of the GNU General Public License     //
//  along with Pawian.  If not, see <http://www.gnu.org/licenses/>.	  //
//									  //
//************************************************************************//

#include <iostream>
#include <string>
#include <cstdlib>
#include <vector>
#include <map>
#include <tuple>
#include <iterator>
#include <memory>

#include "PwaUtils/AbsLh.hh"
#include "FitParams/PwaCovMatrix.hh"
#include "AppUtils/AppBase.hh"
#include "PwaUtils/GlobalEnv.hh"
#include "PwaUtils/EvtDataBaseList.hh"
#include "PwaUtils/WelcomeScreen.hh"
#include "PwaUtils/DynRegistry.hh"

#include "pbarpUtils/spinDensityHist.hh"

#include "ConfigParser/globalParser.hh"

#include "Utils/PawianCollectionUtils.hh"
#include "Utils/ErrLogUtils.hh"

#include "Event/EventReaderDefault.hh"
#include "Event/Event.hh"
#include "Event/EventList.hh"

#include "FitParams/ParamFactory.hh"
#include "FitParams/AbsPawianParameters.hh"

#include "ErrLogger/ErrLogger.hh"


int main(int __argc,char *__argv[]){
  clock_t start, end;
  start= clock();

  for (int i=0; i<__argc ; ++i) Info << __argv[i] << endmsg;
 
  Info << welcomeScreen << endmsg;
  Info << "Compiled " << __DATE__ << " " << __TIME__ << endmsg;

  // Parse the command line
   globalParser* globalAppParams=new globalParser(__argc, __argv);

   std::vector<std::string> pbarpCfgs = globalAppParams->pbarpCfgs();
   std::vector<std::string> epemCfgs = globalAppParams->epemCfgs();
   std::vector<std::string> resCfgs = globalAppParams->resCfgs();

   //requirement single channel  sum reactionCfgs.size() == 1
   unsigned int numReactions=pbarpCfgs.size()+epemCfgs.size()+resCfgs.size();
   Info << "numReactions: " << numReactions << endmsg;
   if (numReactions != 1){
     Alert << "for this single channel app it is required to define exactly 1 reaction!!!"
	   << "\n number of reactions here: " << numReactions << endmsg;
     exit(1);
   }

   GlobalEnv::instance()->setup(globalAppParams);
 
   char* argvWoCfgFile[__argc];
   int argcWoCfgFile=0;
   for (int i=0; i<__argc ; ++i){
     Info << "__argv[" << i << "]: " <<  __argv[i] << endmsg;
     std::string currentArgv(__argv[i]);
     if(currentArgv =="-c" || currentArgv =="--configFile"){
       Alert << "for the singleCannelApp it is not allowed to use the flag -c !!!" << endmsg;
       exit(1); 
     }
     else if(currentArgv !=(char*)"--pbarpFiles" && currentArgv !=(char*)"--epemFiles" && currentArgv !=(char*)"--resFiles"){
       argvWoCfgFile[argcWoCfgFile]=__argv[i];
       argcWoCfgFile++;
     }
     else ++i;
   }

   bool isPbarpChannel=false;
   if (pbarpCfgs.size()==1) isPbarpChannel=true;

   AppBase theAppBase;
   theAppBase.addChannelEnvs(argcWoCfgFile, argvWoCfgFile);

   GlobalEnv::instance()->replaceParser(GlobalEnv::instance()->Channel(0)->parser());
   GlobalEnv::instance()->setupChannelEnvs();

  // Set the desired error logging mode
  setErrLogMode(GlobalEnv::instance()->parser()->getErrLogMode());

  // Get mode
  std::string mode=GlobalEnv::instance()->parser()->mode();
 
  theAppBase.createLhObjects();

  if (mode=="dumpDefaultParams"){
    theAppBase.dumpDefaultParams();
    return 1;
  }

  // Read start param file
  std::shared_ptr<AbsPawianParameters> unsortedStartPawianParams=theAppBase.streamPawianParams();
  GlobalEnv::instance()->setStartPawianParams(unsortedStartPawianParams);
  std::shared_ptr<AbsPawianParameters> startPawianParams=GlobalEnv::instance()->startPawianParams();

  // fitParCol theStartparams;
  // fitParCol theErrorparams;
  // theAppBase.streamParams(theStartparams, theErrorparams); 

  if (mode=="gen"){
    theAppBase.generate(startPawianParams);
    return 1;
  }

  std::cout << "\n\n**************** Fit parameter **************************" << std::endl;
  startPawianParams->print(std::cout);
  // for (int i=0; i<int(upar->Params().size()); ++i){
  //   std::cout << upar->Name(i) << "\t" << upar->Value(i) << "\t" << upar->Error(i) << std::endl;
  // }

  // Fix params for all channels
  if (GlobalEnv::instance()->parser()->doScaling()) theAppBase.fixAllReleaseScaleParams(startPawianParams);
  else{
    std::vector<std::string> fixedParams;
    std::vector<std::string> fixedChannelParams = GlobalEnv::instance()->parser()->fixedParams();
    fixedParams.insert(fixedParams.end(), fixedChannelParams.begin(), fixedChannelParams.end());
    theAppBase.fixParams(startPawianParams,fixedParams);
  }

  //fill param list names for dynamics
  std::vector<std::shared_ptr<AbsDynamics> > dynVec=DynRegistry::instance()->getDynVec();
  std::vector<std::shared_ptr<AbsDynamics> >::iterator itDyn;
  for(itDyn=dynVec.begin(); itDyn!=dynVec.end(); ++itDyn){
    (*itDyn)->fillParamNameList();
  } 

  // Disable output buffering
  setvbuf(stdout, NULL, _IONBF, 0);

  if(mode == "server" || mode == "evoserver"){
    theAppBase.fitServerMode(startPawianParams);
    return 1;
  }

  if(mode == "client"){
    theAppBase.fitClientMode(startPawianParams);
  return 1;
  }

  // The following modes only need the primary channel data/mc and lh ptr
  std::shared_ptr<AbsLh> theLhPtr = GlobalEnv::instance()->Channel()->Lh();

  const std::string datFile=GlobalEnv::instance()->parser()->dataFile();
  const std::string mcFile=GlobalEnv::instance()->parser()->mcFile();
  Info << "data file: " << datFile ;  // << endmsg;
  Info << "mc file: " << mcFile ;  // << endmsg;

  std::vector<std::string> dataFileNames;
  dataFileNames.push_back(datFile);

  std::vector<std::string> mcFileNames;
  mcFileNames.push_back(mcFile);

  if(mode == "spinDensity" && isPbarpChannel){
    bool cacheAmps = GlobalEnv::instance()->parser()->cacheAmps();
    Info << "caching amplitudes enabled / disabled:\t" <<  cacheAmps << endmsg;
    if (cacheAmps) GlobalEnv::instance()->Channel()->Lh()->cacheAmplitudes();
    
    EventList eventsData;
    theAppBase.readEvents(eventsData, dataFileNames, 0, GlobalEnv::instance()->Channel()->useDataEvtWeight(), 0, spinDensityHist::MAX_EVENTS);
    
    EventList mcData;
    theAppBase.readEvents(mcData, mcFileNames, 0, GlobalEnv::instance()->Channel()->useMCEvtWeight(), 0, spinDensityHist::MAX_EVENTS);
    
    std::shared_ptr<EvtDataBaseList> eventListPtr(new EvtDataBaseList(0));
    eventListPtr->read(eventsData, mcData);
    
    GlobalEnv::instance()->Channel()->Lh()->setDataVec(eventListPtr->getDataVecs());
    GlobalEnv::instance()->Channel()->Lh()->setMcVec(eventListPtr->getMcVecs());
    
    std::shared_ptr<spinDensityHist> theSpinDensityHist(new spinDensityHist(GlobalEnv::instance()->Channel()->Lh(), startPawianParams));
    
    std::string serializationFileName = GlobalEnv::instance()->serializationFileName();
    std::ifstream serializationStream(serializationFileName.c_str());
    
    if(!serializationStream.is_open()){
      Warning << "Could not open serialization file." << endmsg;
    }
    else{
      boost::archive::text_iarchive boostInputArchive(serializationStream);
      std::shared_ptr<PwaCovMatrix> thePwaCovMatrix(new PwaCovMatrix);
      boostInputArchive >> *thePwaCovMatrix;
      theSpinDensityHist->SetCovarianceMatrix(thePwaCovMatrix);
    }
    theSpinDensityHist->Calculate();
    return 1;    
  }

  int noOfDataEvents = GlobalEnv::instance()->parser()->noOfDataEvts();
  int ratioMcToData= GlobalEnv::instance()->parser()->ratioMcToData();

  EventList eventsData;
  theAppBase.readEvents(eventsData, dataFileNames, 0, GlobalEnv::instance()->Channel()->useDataEvtWeight(), 0, noOfDataEvents);

  int maxMcEvts=eventsData.size()*ratioMcToData;

  EventList mcData;
  theAppBase.readEvents(mcData, mcFileNames, 0, GlobalEnv::instance()->Channel()->useMCEvtWeight(), 0, maxMcEvts-1);

  std::shared_ptr<EvtDataBaseList> eventListPtr(new EvtDataBaseList(0));

  if (mode=="plotMode"){
    theAppBase.plotMode(eventsData, mcData, eventListPtr);
    return 1;
  }

  if (mode=="qaModeSimple"){
    theAppBase.qaModeSimple(eventsData, mcData, startPawianParams);
    return 1;
  }

  eventListPtr->read(eventsData, mcData);
  eventsData.removeAndDeleteEvents(0, eventsData.size()-1);
  mcData.removeAndDeleteEvents(0, mcData.size()-1);

  theLhPtr->setDataVec(eventListPtr->getDataVecs());
  theLhPtr->setMcVec(eventListPtr->getMcVecs());

  Info << "\nThe parameter values and errors are: " << "\n" << endmsg;
  startPawianParams->print(std::cout);

  double evtWeightSumData = eventListPtr->NoOfWeightedDataEvts();
  double evtWeightSumMc = eventListPtr->NoOfWeightedMcEvts();
  if (mode=="qaMode"){
      theAppBase.qaMode(startPawianParams, evtWeightSumData );
      end= clock();
      double cpuTime= (end-start)/ (CLOCKS_PER_SEC);
      Info << "cpuTime:\t" << cpuTime << "\tsec" << endmsg;

      return 1;
  }


  bool cacheAmps = GlobalEnv::instance()->parser()->cacheAmps();
  Info << "caching amplitudes enabled / disabled:\t" <<  cacheAmps << endmsg;
  if (cacheAmps) theLhPtr->cacheAmplitudes();

  if(mode=="pwa" || mode=="evo"){
    theAppBase.fitNonServerMode(startPawianParams, evtWeightSumData, evtWeightSumMc);
    return 1;
  }
  return 1;
}